PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J595900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 310aa    MW: 33111.4 Da    PI: 10.0566
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J595900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.1e-1998147255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+WvAeIr+p++   r r +lg+f tae+Aa+a+++a++ l+g
  Pavir.J595900.1.p  98 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFATAEDAARAYDRAALLLYG 147
                        59****999.**********954...5**********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.43E-1798153No hitNo description
Gene3DG3DSA:3.30.730.108.9E-3098154IPR001471AP2/ERF domain
PROSITE profilePS5103222.37998155IPR001471AP2/ERF domain
SMARTSM003809.9E-3998161IPR001471AP2/ERF domain
PfamPF008471.5E-1298146IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2198154IPR016177DNA-binding domain
PRINTSPR003673.0E-1099110IPR001471AP2/ERF domain
PRINTSPR003673.0E-10121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAAAVEVFVQ LGGSGVVGFD VWVIECVVRA RVCVGGRVGL GGGRAALPNR TKPPVPWTWH  60
RTNSSPPAAA EVAESSAGVD GRKKGKAPKG GPENAKFRYR GVRQRSWGKW VAEIREPRKR  120
SRKWLGTFAT AEDAARAYDR AALLLYGPRA HLNLTSPPPP SLAAPRSHPH SSASASSPPA  180
LRPLLPRPAP HQHLGAGAPA APAFHHHQFQ YHLLPPPPQQ PTPPLYFAST ATASTVTTTV  240
PPRVEPQKPA VAPAVGSSTS RLEPPQAGTP EEAAAEAGWE YNGGEEEDYA SALLWDEPEP  300
FFWFDVFLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1699154662ATERF1
3gcc_A4e-1699154662ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13442GGRVGLGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J595900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649551.12e-97ethylene-responsive transcription factor ABI4
TrEMBLQ8L7W95e-96Q8L7W9_MAIZE; AP2 domain transcription factor
STRINGPavir.J33237.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133032632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.18e-22ERF family protein