PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J595800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 216aa MW: 23177.4 Da PI: 11.6833 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65.3 | 1.1e-20 | 24 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd+ll +av+++G+++W+ I+++++ gR++k+c++rw + Pavir.J595800.1.p 24 KGSWTPEEDDLLRRAVTRHGPRNWSVISAEIP-GRSGKSCRLRWCNQ 69 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 61.3 | 2e-19 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eEd l+v a++q+G++ W+tIar++ gRt++++k++w++ Pavir.J595800.1.p 76 RRAFTPEEDALIVAAHAQYGNK-WATIARMLH-GRTDNSVKNHWNST 120 678*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.441 | 19 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.27E-31 | 22 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-17 | 23 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-20 | 24 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-25 | 25 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-15 | 26 | 68 | No hit | No description |
SMART | SM00717 | 5.3E-16 | 75 | 123 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.625 | 76 | 125 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.5E-16 | 76 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.51E-12 | 78 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 78 | 123 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MVVLPGGADG GGAPAGSGGP ARVKGSWTPE EDDLLRRAVT RHGPRNWSVI SAEIPGRSGK 60 SCRLRWCNQL SPGVERRAFT PEEDALIVAA HAQYGNKWAT IARMLHGRTD NSVKNHWNST 120 LRRHRRAAAA AANGGALPLR PLAAAAGPPP VPLRHLKLAD PRGVGAGLRR PPLDLKREED 180 DDEEDRGRGR NQRGLRASWR AQKRPCLGAP ALILL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-35 | 23 | 123 | 3 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-35 | 19 | 123 | 53 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-35 | 19 | 123 | 53 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-35 | 23 | 123 | 3 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-35 | 23 | 123 | 3 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J595800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727659 | 1e-125 | KJ727659.1 Zea mays clone pUT5586 MYB transcription factor (MYB119) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809452.1 | 8e-81 | transcription factor MYB77-like | ||||
Swissprot | O23160 | 5e-53 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A2S3HDC1 | 2e-79 | A0A2S3HDC1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J33236.1.p | 1e-116 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 7e-53 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J595800.1.p |
Publications ? help Back to Top | |||
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