PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J591700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 312aa MW: 34765.4 Da PI: 8.7124 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.7e-07 | 62 | 125 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT+ ++e+lv++ ++ + W I+ t + +Rt+kq+k++w +y Pavir.J591700.1.p 62 RNEWTPADEEKLVNVWLMHSVDcvdgnsksgptFWGQISDTYNattdplRHRTAKQLKDHWSMY 125 789**********************************************************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.411 | 57 | 126 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 59 | 125 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.01E-5 | 59 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-4 | 61 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF14303 | 4.7E-6 | 167 | 278 | IPR029466 | No apical meristem-associated, C-terminal domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MTDAPPPYPY PPYPYPPYPY PPPPTFTTSA PHGHAGGAAS AGSENEGGGT TAPCRPAIPK 60 KRNEWTPADE EKLVNVWLMH SVDCVDGNSK SGPTFWGQIS DTYNATTDPL RHRTAKQLKD 120 HWSMYNARVS LFNAIYNQEV SKRQSGADDD MVMDEAKARY ARRAGHEFKL FHWWEAVRHQ 180 PKWSVKHGGG PNIDVSKRSR LGASGEYSSG SRETDEEVNR PPGRDRSKAA AQKGKGKVGS 240 SRHTSTDSAE MGEKLEDLCK TTHEYAQAKL WKQWNIRSSR STDGMTDAQK KVHDRALKHL 300 QQQLHPNDDD E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J591700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008670977.1 | 1e-85 | ribonuclease 3 | ||||
TrEMBL | K7UAL2 | 4e-84 | K7UAL2_MAIZE; Putative MYB DNA-binding domain superfamily protein | ||||
STRING | Pavir.J22374.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3263 | 3 | 37 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J591700.1.p |