PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J561900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 141aa MW: 14807.9 Da PI: 9.1872 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.1 | 1.1e-36 | 22 | 122 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk +rr+C++dC+lapyfpa++p+++a+v+++FGasnv ++l++lp +er +a+++++ eA+ r++dPvyG++g++ +lq ++ ++ Pavir.J561900.2.p 22 RCAACKNQRRRCSQDCILAPYFPASDPQRYACVQRVFGASNVARMLQNLPIHERGKAADTMAVEAHRRVQDPVYGCAGIVGRLQGEITAVQC 113 6******************************************************************************************* PP DUF260 93 elallkeel 101 ela++++++ Pavir.J561900.2.p 114 ELARTQAQI 122 ****99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.678 | 21 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-36 | 22 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MSTSSNMEAA AAAAATTPGI KRCAACKNQR RRCSQDCILA PYFPASDPQR YACVQRVFGA 60 SNVARMLQNL PIHERGKAAD TMAVEAHRRV QDPVYGCAGI VGRLQGEITA VQCELARTQA 120 QIAVHAAAAG RARPAVDAPS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-32 | 13 | 126 | 1 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-32 | 13 | 126 | 1 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J561900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806770.1 | 9e-78 | LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 1e-40 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 1e-40 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2S3HD56 | 2e-76 | A0A2S3HD56_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J09684.1.p | 6e-78 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-39 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J561900.2.p |