PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J561900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 188aa    MW: 20029.6 Da    PI: 6.2424
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J561900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.92.5e-36221221101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk +rr+C++dC+lapyfpa++p+++a+v+++FGasnv ++l++lp +er +a+++++ eA+ r++dPvyG++g++ +lq ++  ++ 
  Pavir.J561900.1.p  22 RCAACKNQRRRCSQDCILAPYFPASDPQRYACVQRVFGASNVARMLQNLPIHERGKAADTMAVEAHRRVQDPVYGCAGIVGRLQGEITAVQC 113
                        6******************************************************************************************* PP

             DUF260  93 elallkeel 101
                        ela++++++
  Pavir.J561900.1.p 114 ELARTQAQI 122
                        ****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.67821122IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-3622119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSTSSNMEAA AAAAATTPGI KRCAACKNQR RRCSQDCILA PYFPASDPQR YACVQRVFGA  60
SNVARMLQNL PIHERGKAAD TMAVEAHRRV QDPVYGCAGI VGRLQGEITA VQCELARTQA  120
QIAVHAAAAG RARPALNAPA QAALSQQQQE QGDAMAMQQD PFQGLDALLV DDYRADVNLV  180
DDEMNTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-31131171113LOB family transfactor Ramosa2.1
5ly0_B1e-31131171113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J561900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806770.13e-99LOB domain-containing protein 24-like
SwissprotP594684e-40LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A2S3HD567e-98A0A2S3HD56_9POAL; Uncharacterized protein
STRINGPavir.J09684.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-38LBD family protein