PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J556700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 349aa MW: 37038.7 Da PI: 7.9933 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.5 | 1.1e-31 | 221 | 276 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ Pavir.J556700.1.p 221 KTRRCWSPELHRQFVAALHQLGGPQVATPKQIREVMQVDGLTNDEVKSHLQKYRLH 276 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.924 | 218 | 278 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-28 | 219 | 279 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.49E-16 | 219 | 279 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-25 | 221 | 276 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 223 | 274 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MGLDVAEIGM GLDLGLDLRL FAARSAGGMA AAAAKGAPAG IEACIRSLEE ERRKIEVFRR 60 ELPLCVRLLA DVIEELKEEA ARKGGDSELR PDDGDKRKWM STAQLWVDSD ATSKSEKEQR 120 NEVTSPEPKL LGGPMPIRAV PAVPLPPPPC FRKDDNASGT AGLPGLSLLP RAAKTSVSPV 180 PAVDEHRQNA GAARLSATMS PSGPGLNLHA QTQQQQQQAR KTRRCWSPEL HRQFVAALHQ 240 LGGPQVATPK QIREVMQVDG LTNDEVKSHL QKYRLHNRRS PGVAPVSQSI VLVGGLWGSQ 300 EQSSSQSGSP QGPLQFSGSG TAISAATVGG DGSSSDEDGK SDEGYSRK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.9263 | 1e-129 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J556700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728056 | 9e-93 | KJ728056.1 Zea mays clone pUT6202 G2-like transcription factor (GLK44) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792667.1 | 0.0 | transcription factor HHO5-like | ||||
TrEMBL | A0A2S3IHS6 | 1e-179 | A0A2S3IHS6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J18103.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1817 | 37 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 1e-40 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J556700.1.p |