PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J523100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 414aa    MW: 42781.4 Da    PI: 4.8044
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J523100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.92.2e-13222273556
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                        + +rrkq+NRe+ArrsR RK a + eLe  v++L  eN++L  +l   +++ 
  Pavir.J523100.1.p 222 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQKF 273
                        679**************************************98887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-15218282IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.254220275IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.8E-10221274No hitNo description
SuperFamilySSF579591.88E-9222271No hitNo description
PfamPF001704.0E-10222271IPR004827Basic-leucine zipper domain
PfamPF124983.1E-51289406IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MERVFSVEEI PNPYWAPPQP QAAATSAVAA PGVGGGGGAG GAGDAAGAMN RCSSEWYFQK  60
FLEEAVLDSP GPVAGVGRGG GGGGAEAAES KPLGVAAAAS SAVVDPVEYN AMLKQKLEKD  120
LAAVAMWRGS GATPPERSAA GSSLPNVDVS HAVAFKPVGG NGIPVENKLA VAPVGGSGPQ  180
VVQNADILVK QTTSSSSREQ SDDDDMEGEA ETTGNANPVQ QRLQRRKQSN RESARRSRSR  240
KAAHLNELEA QVAQLRVENS SLLRRLADVN QKFNEAAVDN RVLKADVETL RAKVKMAEDS  300
VKRVTGMNAL FPAVSDMSSL SMPFNGSPSD STSDAAVPIQ DDPNSYFASP SEIGGNNGYM  360
PEIASSAQED DDFVNAALAA GKMDRTASLQ RVASLEHLQK RMCGGPASSG STS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.13920.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 5 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J523100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283550.0KJ728355.1 Zea mays clone pUT6637 bZIP transcription factor (bZIP128) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793253.10.0bZIP transcription factor RISBZ2-like
SwissprotQ7X9A80.0RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLA0A1E5WG510.0A0A1E5WG51_9POAL; Light-inducible protein CPRF2
STRINGPavir.J01091.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.25e-42bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]