PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J493200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 348aa    MW: 36393.8 Da    PI: 6.3653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J493200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.6e-09163210455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Pavir.J493200.1.p 163 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 210
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-17157228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-10157214No hitNo description
PROSITE profilePS5088815.123159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-17159227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDSDYVASLL MGHSAAPGLD FAALDGGLLD ALCGAGLFGA PGVAAGAGGG GSPEGSSVSD  60
PAWARATDSG NARKRKAPPA GSANGKEACL GKAGGPKAPD GKKGRVGAGG SPVKPKVEEA  120
TASDGSVEDK GQKKGKGKST KPPVEPPKDY VHVRARRGQA TDSHSLAERV RREKISQRMK  180
FLQDLVPGCN KVVGKALMLD EIINYVQSLQ QQVEFLSMKL ATVNPQLDFS NLSTLLHKDM  240
YQACGPSVNS VFPLESAGAA FPFCNQADLF QSFGSGAMED QCSLSLLDTA LPHTTNPQFA  300
FQKQQRDFWE DGLQNALPIV SEQSQENGVS APSFDGQLQA DQTKIEF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.48260.0callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J493200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804696.10.0transcription factor BHLH089-like
SwissprotQ9CAA92e-54BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A3L6QSR40.0A0A3L6QSR4_PANMI; Transcription factor bHLH49-like
STRINGPavir.J32774.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]