PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J483700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 256aa    MW: 27197 Da    PI: 8.6824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J483700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11136183455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  Pavir.J483700.1.p 136 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKASVLDEIINYIQSLQ 183
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.79E-12130187No hitNo description
SuperFamilySSF474598.9E-18130198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.406132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-18132200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-9136183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-11138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDPAPAVAAE LWRPPHLAAG GGRAVEATSA VTEKSSGGRG GGGAGRRRQR ETPASEDDSS  60
RIVSTSGGGG GQDLTDSGAK RFKTNKSNDN NGNVRTEAET DSRSAAKAVS KNPPAPEPPK  120
QDYIHVRARR GQATDSHSLA ERARREKISE RMKVLQDLVP GCNKVIGKAS VLDEIINYIQ  180
SLQCQVEFLS MKLEAVNAHA SNGVEAFSTK DFASQTYSTA PGLTFDTQTP REYGHGTSTS  240
EWLHMQIGGA YERVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642GGRGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.414620.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J483700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796030.11e-167transcription factor BHLH089-like
SwissprotQ84T081e-117BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A2S3IH301e-166A0A2S3IH30_9POAL; Uncharacterized protein
STRINGPavir.J31567.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.19e-67BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]