PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J443800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 270aa MW: 28067.7 Da PI: 10.4521 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.3 | 8.2e-14 | 187 | 231 | 3 | 47 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +++r++r++kNRe+A rsR+RK+a+i+eLe v +Le+ N +L Pavir.J443800.1.p 187 AVQRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEANAELLR 231 689*************************************98753 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.5E-8 | 185 | 247 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.3E-13 | 187 | 233 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.864 | 187 | 229 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.24E-10 | 189 | 236 | No hit | No description |
CDD | cd14707 | 5.08E-19 | 189 | 239 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-12 | 190 | 245 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 192 | 207 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MASSRVMPSS SPSHTASDLA RFAQAASRPG GGGGSGLGSM NIEEFLRGIY GDMPTPATPA 60 PAAGRPMPQA PPSAPGIAAR KTAEEVWKEI TTGGGSAGTA APVPQAVVPA GAGGGASAGG 120 PEMTLEDFLA REGAVKEDDV RISGPSAPAE GQVVMGFLGG AEGVGVAGGG GGRGRKRQLM 180 DPVDRAAVQR QKRMIKNRES AARSRERKQA YIAELESLVT QLEEANAELL RGQEERHQKR 240 LKELLERVTP VIVRKKPSQD LRRTNSMQW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.11189 | 7e-75 | callus| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J443800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816287.1 | 1e-130 | bZIP transcription factor 12 | ||||
Swissprot | Q0JHF1 | 1e-96 | BZP12_ORYSJ; bZIP transcription factor 12 | ||||
TrEMBL | A0A2S3HPN1 | 1e-129 | A0A2S3HPN1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05659.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2665 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03970.1 | 1e-28 | G-box binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J443800.1.p |
Publications ? help Back to Top | |||
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