PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J402400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 566aa MW: 63455.9 Da PI: 7.8396 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.8 | 7.9e-11 | 111 | 151 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g+W +a+++g +++ qc++++ Pavir.J402400.1.p 111 WNADEEILLLEGIEMYGLGNWLEVAEHVG-TKSKLQCIDHYT 151 *****************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF025024 | 3.7E-175 | 37 | 560 | IPR016827 | Transcriptional adaptor 2 |
SMART | SM00291 | 1.6E-10 | 47 | 92 | IPR000433 | Zinc finger, ZZ-type |
Pfam | PF00569 | 3.2E-9 | 49 | 90 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 1.49E-26 | 51 | 99 | No hit | No description |
PROSITE profile | PS50135 | 10.824 | 51 | 94 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 2.71E-14 | 51 | 114 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 53 | 80 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 3.59E-12 | 104 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 21.633 | 106 | 158 | IPR017884 | SANT domain |
SMART | SM00717 | 5.0E-10 | 107 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-11 | 110 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.10E-11 | 111 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-7 | 111 | 153 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.02E-21 | 468 | 554 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MGRSRGVPNS GDDDTGHRSK RRRVSSSGDA TDTISAAMGG AGEGGGKKAL YHCNYCNKDI 60 SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYRVMD NLSFPLICPD WNADEEILLL 120 EGIEMYGLGN WLEVAEHVGT KSKLQCIDHY TTAYMNSPCY PLPDMSHVNG KNRKELLAMA 180 KVQGESKKGT SLLPGELTPK AESPFSPSRV KLEDALGDGP AGRSPSHMAG GANKKASNAG 240 QIKDGANVSK VEDGHVDRSV GVKKPRYSAD EGPSLTELSG YNSKRHEFDP EYDNDAEQAL 300 AEMEFKETDS ETDRELKLRV LRIYLSRLDE RKRRKEFILE RNLLFPNPLE KDLTNEDKEV 360 YHRYKVFMRF LSKEEHEALV RSVIEERKIR RRIQELQECR SAGCRTLAEA KIHIEQKRKK 420 EYELNSQKSK ESGQLIPNNK SVQKMNRPMK IESDGNLDPK KGGTGLDSPK TTGLTNVKQW 480 DDWDIVGLPG AELLSSSEKL LCCQNRLLPS HYLRMQEVLM QEIFKSNGLK KEDARVLFKV 540 DPSKVDTVYD MVMKKLGNLE EAPTV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw2_C | 3e-38 | 51 | 166 | 5 | 120 | Transcriptional adapter 2 |
6cw3_E | 3e-38 | 51 | 166 | 5 | 120 | Transcriptional adapter 2 |
6cw3_G | 3e-38 | 51 | 166 | 5 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 23 | KRRRV |
2 | 330 | 335 | RKRRKE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5866 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J402400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041333 | 0.0 | BT041333.1 Zea mays full-length cDNA clone ZM_BFb0092G09 mRNA, complete cds. | |||
GenBank | KJ727498 | 0.0 | KJ727498.1 Zea mays clone pUT5357 MYB-related transcription factor (MYBR66) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796153.1 | 0.0 | transcriptional adapter ADA2 | ||||
Swissprot | Q75LL6 | 0.0 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | A0A2S3II23 | 0.0 | A0A2S3II23_9POAL; Transcriptional adapter | ||||
STRING | Pavir.Ia00545.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7708 | 38 | 47 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J402400.1.p |
Publications ? help Back to Top | |||
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