PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J397400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 281aa    MW: 30723.2 Da    PI: 4.6333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J397400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.5e-102042441055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L+ l+P+      +K++ +++Le+A +Y+k Lq
  Pavir.J397400.1.p 204 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAAQYVKFLQ 244
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.761194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-14195260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-12199256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.56E-12203248No hitNo description
PfamPF000105.2E-7204244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
METDMMAQLL GADDHCFTYE HVDESMEALV ALFLPSLDND SNSSSSCLNY DVPPLCWPQP  60
GHSSSVTSLP DPAQNFESFE FPVTNPLKPT DFNSLSDVPY FSNDLSPLQN HSSSIEEEAA  120
NDVPATKKQK SSAAIKASKK TKKAGKKDSV CNEDGTNAYI DAQCSSSCTS EEGSLEGNMN  180
SSSKKTGTRA SRGAATDPQS LYARKRRERI NERLRILQNL VPNGTKVDIS TMLEEAAQYV  240
KFLQLQIKLL SSDDMWMYAP IAYNGINISS IDLNISPLQK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J397400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959802.21e-173transcription factor bHLH54
SwissprotQ7XHI94e-50BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A1E5UZQ71e-179A0A1E5UZQ7_9POAL; Transcription factor bHLH84
STRINGPavir.Ba01059.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-38bHLH family protein