PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J396300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 39104.4 Da PI: 6.7063 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.2 | 5.4e-52 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+d Pavir.J396300.1.p 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 100 69****************************.9***************943444442456********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++ + + +gl+ktLvfy grap+g+ktdW+mheyrl Pavir.J396300.1.p 101 KAIFLGNARRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 139 *****999*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-58 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.838 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003002 | Biological Process | regionalization | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010455 | Biological Process | positive regulation of cell fate commitment | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MHPSGGPLSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQNDWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNARR IGLRKTLVFY 120 IGRAPHGKKT DWIMHEYRLD EENVEIQEDG WVVCRVFKKK NYQRGLNPAE MAELDDDELQ 180 PFPVPVPGAL PIDHKHNPHL MQYDHQFPSF DPTMQLPQLM SADQPVQTLL PSQPGVPIAM 240 SSLDVECSQN LMKLTSNGSD DAMPHSGGGG VHRFTGTTDW SILDKLLASH QNLDQLFQGK 300 VSTAYAPSMA PYHEQLMELG GSSSLQRLPL QYLGGEASDL LRFPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 8e-51 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 8e-51 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00250 | DAP | Transfer from AT1G79580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J396300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ833965 | 0.0 | AJ833965.1 Zea mays partial mRNA for hypothetical protein (nac6 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812849.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Swissprot | Q5Z6B6 | 1e-122 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A2T7DXZ2 | 0.0 | A0A2T7DXZ2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05053.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-100 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J396300.1.p |
Publications ? help Back to Top | |||
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