PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J369800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HB-other | ||||||||
Protein Properties | Length: 190aa MW: 21662.5 Da PI: 9.8124 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.2 | 3.8e-15 | 20 | 72 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ +++q++ Le+++ +yp+ ee+ + A+ +gLt +qV++WF+ rR ke++ Pavir.J369800.1.p 20 TKKSPQQIQMLEKFYSDVQYPKPEEMGQYATCVGLTYNQVRIWFKERRRKERR 72 66799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-15 | 11 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.722 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.7E-14 | 15 | 77 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.01E-14 | 16 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.50E-8 | 20 | 63 | No hit | No description |
Pfam | PF00046 | 1.9E-12 | 20 | 72 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MPPAQMMTNS LGAKRENAGT KKSPQQIQML EKFYSDVQYP KPEEMGQYAT CVGLTYNQVR 60 IWFKERRRKE RREMEAIRSH MERQLSAQSS GPRSSSSSSS CDQDPMYGTS CSRPEFGSRS 120 TSIVGEESTV LSQILFPKDY ILRKIFRKDG PPLGSEFDPL PQSERDCIRD TTCHHSSQNQ 180 RAVKKRKVQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 72 | RRRKERRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J369800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793780.1 | 1e-104 | homeobox-DDT domain protein RLT3 isoform X2 | ||||
TrEMBL | A0A3L6SA75 | 1e-104 | A0A3L6SA75_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J13571.1.p | 1e-139 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4556 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 2e-21 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J369800.1.p |