PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J362100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 445aa    MW: 46335.6 Da    PI: 7.3271
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J362100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1134.1e-3591214289
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssas. 83 
                        +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +          ++++s++ ++s ++s++ 
  Pavir.J362100.1.p  91 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLEVLpawqptanaAAPPSSSTHPDSAENSDDq 182
                        79**************************************************************9988777664444444533333333331 PP

                TCP  84 nsssg..........................k 89 
                        ++ ++                          +
  Pavir.J362100.1.p 183 AQAITvahtsfdfpgaggasgtgflppsldsD 214
                        33333544445555555555555555555541 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-3191183IPR005333Transcription factor, TCP
PROSITE profilePS5136933.25793151IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MGDAGQSHHH HHAFQPQLLS FGSGGVGQQH VHQFAAQAQA PAAASHSRSR GGAAAGGEIV  60
AATSASHSRV RGGGGGGEIV AVQGGHIVRS TGRKDRHSKV CTARGPRDRR VRLSAHTAIQ  120
FYDVQDRLGY DRPSKAVDWL IKNAKDAIDK LEVLPAWQPT ANAAAPPSSS THPDSAENSD  180
DQAQAITVAH TSFDFPGAGG ASGTGFLPPS LDSDSIADTI KSFFPMAGTA GGKASSSTAA  240
AQSSAMGFQS YTPDLLSRTG SHSQELRLSL QPLPDPMFHQ HQQQDRSHGQ GGNGSAQQAL  300
FPGAASYSFG GGVMWAEQAQ GQRMVPWNVP DPGGGSTGGY LFNVSQQAAH MQAALAGQSQ  360
FFFQRGPLQS SNHQPSERGW PETVEADNPM QQQQHQGGLN PAVFAPGIGF SGFRIPTRIQ  420
GDEEHNGGGN GDKPPPSVSS ASHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2198151154Putative transcription factor PCF6
5zkt_B9e-2198151154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.172910.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J362100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557080.0EU955708.1 Zea mays clone 1543050 mutant cincinnata mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819000.10.0transcription factor PCF5-like
RefseqXP_025819001.10.0transcription factor PCF5-like
SwissprotQ8LT070.0PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A2S3HYW50.0A0A2S3HYW5_9POAL; Uncharacterized protein
TrEMBLA0A2T7DST40.0A0A2T7DST4_9POAL; Uncharacterized protein
TrEMBLA0A3L6R0N00.0A0A3L6R0N0_PANMI; Uncharacterized protein
STRINGPavir.J03475.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-65TCP family protein