PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J328400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 293aa    MW: 32276.3 Da    PI: 8.087
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J328400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-103985347
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                        WT+eE +l+ +a ++   +   +W+++a++++ ++t  +++++++++
  Pavir.J328400.1.p 39 EWTAEENKLFEEALARVDRNapdRWEKVAAMLP-RKTVVDVVNHYNDL 85
                       7*****************99*************.***********986 PP
2Myb_DNA-binding50.35.4e-16144188347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++ + k++G+g+W+tI+r+  ++Rt+ q+ s+ qky
  Pavir.J328400.1.p 144 PWTEEEHRLFLMGLKKYGKGDWRTISRKYVTTRTPTQVASHAQKY 188
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.3613589IPR017884SANT domain
SMARTSM007174.0E-83688IPR001005SANT/Myb domain
SuperFamilySSF466894.31E-113893IPR009057Homeodomain-like
PfamPF002491.2E-83985IPR001005SANT/Myb domain
CDDcd001678.23E-93985No hitNo description
Gene3DG3DSA:1.10.10.607.4E-53985IPR009057Homeodomain-like
PROSITE profilePS5129418.973137193IPR017930Myb domain
SuperFamilySSF466891.51E-17139193IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-17140191IPR006447Myb domain, plants
SMARTSM007173.9E-13141191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-12141187IPR009057Homeodomain-like
PfamPF002497.7E-13144188IPR001005SANT/Myb domain
CDDcd001672.20E-11144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MMAEAWAQVL LPPTAPFFSG QPSCLWQDRH AGFGGRWDEW TAEENKLFEE ALARVDRNAP  60
DRWEKVAAML PRKTVVDVVN HYNDLENDVG YIEAGLVPFP RYSGSPPSSG FTLEDWDGGD  120
GVFRRGYCLK RARGPDQERK KGVPWTEEEH RLFLMGLKKY GKGDWRTISR KYVTTRTPTQ  180
VASHAQKYFI RLNSGGKDKR RSSIHDITTV NLPDEDRGNG SPSPSPPSAA TNPSAAGQFG  240
ALVDVKPFAP PLGVAHAHPY GNVKLEPKGA LVGGLGFDDS VLLRMQCEAG QL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-13401021173RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.145450.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J328400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794441e-180HF679444.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB38 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815076.10.0transcription factor DIVARICATA-like isoform X1
SwissprotQ8S9H71e-74DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2T7DED30.0A0A2T7DED3_9POAL; Uncharacterized protein
STRINGPavir.J16113.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.14e-79Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]