PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J313400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 176aa MW: 19408 Da PI: 10.0033 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.3e-16 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l++ + ++G g+W+++++ g+ R++k+c++rw +yl Pavir.J313400.1.p 22 KGLWSPEEDDKLYNHIIRYGVGCWSSVPKLAGLQRCGKSCRLRWINYL 69 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 75 | 119 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ Pavir.J313400.1.p 75 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 119 899*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.372 | 17 | 69 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 17 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.36E-29 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-12 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 22 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.67E-11 | 25 | 69 | No hit | No description |
PROSITE profile | PS51294 | 24.517 | 70 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-26 | 73 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 75 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.79E-10 | 77 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MGRHAHAGSA AAAAGVQQKL RKGLWSPEED DKLYNHIIRY GVGCWSSVPK LAGLQRCGKS 60 CRLRWINYLR PDLKRGSFSQ QEEDAIVGLH EILGNRWSQI ASHLPGRTDN EIKNFWNSCL 120 KKKLRQRGID PTTHKPISAD AAAAAAALDQ PASQEHKPPA ADAGGFAPKE QHQQVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-29 | 20 | 124 | 5 | 108 | B-MYB |
1h8a_C | 1e-28 | 19 | 124 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 125 | LKKKLRQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.14374 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J313400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961618 | 1e-176 | EU961618.1 Zea mays clone 237078 myb-related protein Hv33 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969673.1 | 1e-103 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 2e-78 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A2T7DHX1 | 1e-104 | A0A2T7DHX1_9POAL; Uncharacterized protein | ||||
STRING | Si005548m | 1e-103 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 3e-74 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J313400.1.p |