PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J298200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 291aa MW: 32438.4 Da PI: 12.6351

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J298200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.5	9.9e-29	17	101	15	99
DUF260 15 dCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 dC+lapyfpa+q+++f n+h+lFG+sn+lk+lk+l++e dam +l+y++++ra+dPv G++++il+l++qle + ael ++ + Pavir.J298200.1.p 17 DCPLAPYFPADQQRRFLNAHRLFGVSNILKTLKRLRPELCADAMGTLIYQSDMRAQDPVGGCYRLILTLERQLELEMAELTAVLH 101 8******************************************************************************988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.096	2	103	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-26	17	98	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MRRVQVPAAQ VQPGVLDCPL APYFPADQQR RFLNAHRLFG VSNILKTLKR LRPELCADAM 60 GTLIYQSDMR AQDPVGGCYR LILTLERQLE LEMAELTAVL HHLALCRQAA AAATAIPPPQ 120 EGGMAADGRP RRHLLQPAAA PPQRQAGGRR RALRQPRTRR RHPSNRPRPP PRSRRRQPAR 180 SWRRAAAAAA ALRLLLLRSH RQRRRQQQAG HRHKPRQHAA IRLRRHLRRR EGGPVHGGAG 240 GDRAAAAPPP RRQLPDRPQG LRDQGGGAHR RVRHAAGAAG PAGGRERRRR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-15	18	117	26	123	LOB family transfactor Ramosa2.1
5ly0_B	1e-15	18	117	26	123	LOB family transfactor Ramosa2.1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	154	GRRRALRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J298200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-27	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Pavir.J298200.1.p