PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J284400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 234aa MW: 27345.4 Da PI: 8.1477 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.4 | 3.7e-21 | 22 | 109 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ +Y+ + GF+vrk++++k++ +g+i +++fvC +eg+r e+k++ + ++ +raetr++C+ ++++ +++ ++ +vt+l+leHnH+l Pavir.J284400.1.p 22 FWLSYGGHKGFEVRKRYTNKRQFDGKISSYKFVCANEGHRLEDKRD-HLTKCPRAETRIDCQVHMNLIMDRkKEILKVTELVLEHNHQL 109 999****************************************999.999***************988877799**************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-16 | 22 | 109 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MLPSFVPNVG IEFRNSDEAW AFWLSYGGHK GFEVRKRYTN KRQFDGKISS YKFVCANEGH 60 RLEDKRDHLT KCPRAETRID CQVHMNLIMD RKKEILKVTE LVLEHNHQLH LPETLHLMVS 120 QRKISDLQAF EIERADDAGI GPKAAHELAS LQVGGPLNLS YTLRDHKNYL RFKRQREMAY 180 GQAGSMLKYF QEKIAENLAF QYALQMDCEE QIANIFWVDA KMIMDYAHFW RCC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J284400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314647.1 | 1e-143 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453SK48 | 1e-138 | A0A453SK48_AEGTS; Uncharacterized protein | ||||
STRING | BRADI2G59232.1 | 1e-131 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-34 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J284400.1.p |