PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J272400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 206aa MW: 22264.2 Da PI: 9.1531 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.8 | 1.5e-06 | 167 | 202 | 3 | 41 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKa 41 + h +Er+RR+++ ++f L +++P + ++ + K+ Pavir.J272400.1.p 167 QDHILAERKRREKLSQRFIALSKIVPGL---KKVRTPKS 202 67999*********************99...88888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.51E-7 | 160 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.82 | 164 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-7 | 168 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.81E-5 | 169 | 203 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MATQWFSNMV IDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ GEVDQALAAA LMPLQQPAAA 60 AEHRPRKAAK VNTSWDSCIT EQGSPADSSS PTILSFGGHA FAKAETHQLP SAPYCGAPAK 120 APKQEVVDAG ATAFHQERPA KRSYDAMVAE VAKVPAPATT RPASQNQDHI LAERKRREKL 180 SQRFIALSKI VPGLKKVRTP KSMAT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 177 | ERKRRE |
2 | 173 | 178 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10595 | 1e-127 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J272400.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036552 | 1e-102 | BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds. | |||
GenBank | KJ726863 | 1e-102 | KJ726863.1 Zea mays clone pUT3404 bHLH transcription factor (bHLH137) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795190.1 | 1e-129 | transcription factor bHLH18-like | ||||
TrEMBL | A0A2S3III0 | 1e-128 | A0A2S3III0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J35103.1.p | 1e-143 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22750.2 | 2e-13 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J272400.1.p |