PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J256000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

ERF

Protein Properties

Length: 171aa MW: 18221.7 Da PI: 8.8474

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J256000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.4	2.7e-16	24	72	4	55
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr ++ +gr++AeIrd + +g r+++ +f+t+e Aa a+++a+ +++ Pavir.J256000.1.p 24 IGVRKRP-WGRYAAEIRDSTRRG--ERVWISTFDTPEAAALAYDHAAYSMRA 72 6****.******43343..**********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	19.322	22	80	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-6	23	34	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.33E-17	23	81	IPR016177	DNA-binding domain
Pfam	PF00847	9.7E-12	24	72	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-21	25	86	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.1E-24	25	81	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-6	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MLQRPAVVNG SSAAEAAEAP PPLIGVRKRP WGRYAAEIRD STRRGERVWI STFDTPEAAA 60 LAYDHAAYSM RAAAAVLNLP VERVQESLHA LGLAAGAFAG DSPVLALKRR HCIRKRCPKN 120 KQKAAAGKEQ TAAASIHGHG KQKQAASSCE LELEDLGADY LEELLALSDQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-24	25	82	17	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J256000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004959050.1	1e-78	ethylene-responsive transcription factor 1
TrEMBL	A0A2S3GWP8	2e-87	A0A2S3GWP8_9POAL; Uncharacterized protein
STRING	Pavir.Bb00653.1.p	1e-119	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP277	37	249

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	1e-27	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Pavir.J256000.1.p