PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J249300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 378aa    MW: 40192 Da    PI: 8.8372
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J249300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_160.14.5e-19238300163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkre+rkq+NRe+Arrs +RK+ae+ee ++ v++L+aeN++L++e+ +l+  ++kl+ e+
  Pavir.J249300.1.p 238 ERELKREKRKQSNRESARRSKLRKQAETEEMATQVESLTAENTSLRSEIGRLTVSSEKLRLEN 300
                        89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-26192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.9E-16233297No hitNo description
SMARTSM003382.3E-20238302IPR004827Basic-leucine zipper domain
PfamPF001701.7E-17238300IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.277240303IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.25E-10241294No hitNo description
CDDcd147021.71E-21243290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAHDESVATQ KTGNTASSPK DQPAPSPYPD WSTMQAYYGP GVLPPTYFAP AIAPGHPPAY  60
MWGPQPLMPH PFGTPYAAMY PHGAAYPHPL VPMVSNPLSV EPTKSATSKD KSSNKKLKEI  120
DRTPVSAGSG NSKRTMSSSE DYSAEGSSDV NDQKVNKTSR KLSSVDGPAA RIEGVIAPNH  180
TLANTAILPQ HCFPAPVIKP SATNVDNSRA MGASISPSPG VIVPPHTGGP TDLSIKDERE  240
LKREKRKQSN RESARRSKLR KQAETEEMAT QVESLTAENT SLRSEIGRLT VSSEKLRLEN  300
SALMVKLKDP EVPAPTDPSP NKAAASSPSP RPAAENFLSM IDGTTSAPGV SWHTEHGEPK  360
LRQLLDSNPS TDVAAVS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.169380.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J249300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807251.10.0common plant regulatory factor 1-like isoform X1
TrEMBLA0A2S3H9G50.0A0A2S3H9G5_9POAL; Uncharacterized protein
TrEMBLA0A2T7EA650.0A0A2T7EA65_9POAL; Uncharacterized protein
STRINGPavir.J01411.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.22e-47G-box binding factor 3