PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J246400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 577aa    MW: 61437.8 Da    PI: 7.9084
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J246400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox322e-103413781954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  Pavir.J246400.1.p 341 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 378
                        554458******************************88 PP
2BELL94.59.5e-31210277572
               BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         q +k++L+sl+e V+krYkqy++qlq vi sFe+vagl +a+p++s+Al+++S+hF+cLk +i +q+
  Pavir.J246400.1.p 210 EQWRKTRLISLMEDVCKRYKQYYQQLQSVICSFETVAGLSNAAPFASMALRTMSKHFKCLKGMILNQL 277
                        689*************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-35140275IPR006563POX domain
PfamPF075265.3E-34145273IPR006563POX domain
PROSITE profilePS5007112.487319382IPR001356Homeobox domain
CDDcd000863.86E-14322383No hitNo description
SMARTSM003892.9E-11322386IPR001356Homeobox domain
SuperFamilySSF466893.85E-17324388IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28325386IPR009057Homeodomain-like
PfamPF059205.1E-19339378IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MSSAAGGGYG GGGGGGGGDH QHQHLLLGQA AGQLYHVPQH SRREKLRFPP DPADSPPPAA  60
WPAPPPFYSY ASSSTSSYSP HSPTLAHAQM VAHALPAGAG AQIPSQNFAL SLSSASSNPP  120
HAPRRQLAPG VATGPYGPFT GYAAVLGRSR FLGPAQKLFE EICDVGGRPA QVDRRSDDGL  180
LDMDAAGDAD HDMDGGDRAA AEAVVVSGAE QWRKTRLISL MEDVCKRYKQ YYQQLQSVIC  240
SFETVAGLSN AAPFASMALR TMSKHFKCLK GMILNQLRNT SKVAAHDGIG KEDMANFALM  300
GGGSGLLRGN SVNAFSQPHN IWRPQRGLPE RAVSVLRSWL FEHFLHPYPT DSDKQMLAKQ  360
TGLTRNQVSN WFINARVRLW KPMVEEIHNL EILQQHKNSS HDMNQLGTQQ TQHSSDSSGK  420
PSDPSSSQRG QSSGMTTRNL SSPASRHIQD ELSQMPQDMP GQVSFAYNGL AAHHGLALSH  480
PQQAEGVGVG VGVGVGVGLG GGGPAANAGV SLTLGLHQNN RTYIAEPLPA ALPLNLAHRF  540
GLEDMSEAYV MGPFAGQDRH FTKEIGGHHL VHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-17328385158Homeobox protein Meis1
4xrs_B4e-17328385158Homeobox protein Meis1
5bng_A5e-17328386159Homeobox protein Meis2
5bng_B5e-17328386159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.199491e-102root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J246400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810296.10.0BEL1-like homeodomain protein 9
TrEMBLA0A2S3HBG80.0A0A2S3HBG8_9POAL; Uncharacterized protein
STRINGPavir.J37847.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.13e-76TALE family protein