PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J228600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 307aa MW: 34082.7 Da PI: 8.732

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J228600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	5.8e-08	57	120	1	47
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT+ ++e+lv+a ++ + W I+ t + +Rt+kq+k++w +y Pavir.J228600.1.p 57 RNEWTPADEEKLVNAWLMHSVDcvdgnsksgptFWGQISDTYNattdplRHRTAKQLKDHWSMY 120 789**********************************************************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.411	52	121	IPR017877	Myb-like domain
SuperFamily	SSF46689	6.61E-6	54	123	IPR009057	Homeodomain-like
SMART	SM00717	7.7E-5	56	123	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-6	56	119	IPR009057	Homeodomain-like
Pfam	PF14303	3.2E-6	162	265	IPR029466	No apical meristem-associated, C-terminal domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MTDAPPPYPY PPYPYPPPPT FTTSAPHGHA GGAASAGSEN EGGGTTAPCR PAIPKKRNEW 60 TPADEEKLVN AWLMHSVDCV DGNSKSGPTF WGQISDTYNA TTDPLRHRTA KQLKDHWSMY 120 NARVSLFNAI YNQEVSKRQS GADDDMVMDE AKARYARRAG HEFKLFHWWE AVRHQPKWSV 180 KHGGGPNIDV SKRSRLGASG EYSSGSRETD EEVNRPPGRD RSKAAARKGK GKVGSSSHTS 240 TDSAEMGEKL EDLCKITHEY AQAKLWKQWN ILSSRSTDGM TDAQKKVHDR ALKRLQQQLH 300 LNDDDE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J228600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008670977.1	2e-88	ribonuclease 3
TrEMBL	K7UAL2	6e-87	K7UAL2_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRING	Pavir.J22374.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3263	3	37

Link Out ? help Back to Top
Phytozome	Pavir.J228600.1.p