PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J217600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 404aa    MW: 45947.2 Da    PI: 6.5087
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J217600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.45.8e-2483173289
               FAR1   2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        fYn+YA + GF +r+++s++++r+g   +++++fvC keg+++++  + ++k++r+r + r gC a+++v ++  +kw++tkl+leHnH +
  Pavir.J217600.1.p  83 FYNAYALRFGFGIRVARSRSERRKGveVFIMKRFVCLKEGHHKKKPVEpSNKKKRKRLSIRDGCPAMMEVVRRGPDKWVITKLVLEHNHVI 173
                        9*************9999988665422799***********99998887899999**********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-2283173IPR004330FAR1 DNA binding domain
PfamPF105518.4E-25261352IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEYLSSEDEE LVEDFIDVED DMGTENIDQG TAVVASQIHG IDPSDGTMPT TGNELLMAAD  60
VVGKNDEPCM GMEFESDAAA RAFYNAYALR FGFGIRVARS RSERRKGVEV FIMKRFVCLK  120
EGHHKKKPVE PSNKKKRKRL SIRDGCPAMM EVVRRGPDKW VITKLVLEHN HVIASADRAR  180
EVQLRRLSGK FQEHENQLQE VRRNVFGDTD AQGLFDYFKI MQSENSGFFC SIQVDSKNCV  240
SNAVWVDARA RMTYTYFGDA VYFDTTYSQN ENMLPFAAFT GVNHHGDTVA FGCALILDRT  300
ESSYGWIFET WLAAMDKRLP FSFTTDDGKG MAAAVAKVFP QCFHRLCRWR ILSRCKKKLT  360
DVYTRFPGFH DELKRCINGC DTVPVFDMVW CSILDKYGLR DDT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124138KKKPVEPSNKKKRKR
2125137KKPVEPSNKKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.274690.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J217600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810978.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025810979.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T7DWY30.0A0A2T7DWY3_9POAL; Uncharacterized protein
STRINGPavir.J26020.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-68FAR1-related sequence 5