PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J214400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 597aa    MW: 67903 Da    PI: 7.4225
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J214400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.17.9e-1533112190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +f+n Y+ e+GF +r  +s+ +  +g+ t+++ vC +eg++ + + k         + ++gC  ++++ +++d+ w++++++++HnH+la
  Pavir.J214400.1.p  33 EFFNMYSWELGFGIRFGRSRIN-ISGRRTRQDIVCACEGRDGSPDAK---------SVHCGCAVMIRLLRKDDDSWYISRFVSNHNHPLA 112
                        6*****************9998.88889************9998877.........99******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1133112IPR004330FAR1 DNA binding domain
PfamPF105515.8E-17235302IPR018289MULE transposase domain
PROSITE profilePS5096610.002477513IPR007527Zinc finger, SWIM-type
SMARTSM005752.5E-5488515IPR006564Zinc finger, PMZ-type
PfamPF044342.0E-4489511IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
LPASWNYGAI EGDRSIFELE EGKVFDSPQE GFEFFNMYSW ELGFGIRFGR SRINISGRRT  60
RQDIVCACEG RDGSPDAKSV HCGCAVMIRL LRKDDDSWYI SRFVSNHNHP LASTCGERRQ  120
WKSHSRIDQM TRDLVKNLRA NNVQISRVCS ILGSMHGSSS YIPFSRQSIR TLCGRLAQES  180
IEGDMSNTLG LFTSMRERDP AMVIRMQLDD EKRIKSLFWC HGSSRFNYSC FGDAITFDTT  240
YRTNLYNLPF GLFVGANHHF QTIIFGAVLL TEETTDAFQW TFRTFVEAMD GQHPRTILTA  300
KESLGGIYSK NSTFKKQLHE LVDEIVSIPE FETRWAQLVE DHGLRENEFL DRAYSNREMW  360
AKPYFTETFC AGMTSTQRSE SANHLLKTYI PRSAPMHLFV SQYNRMIADR EADEGKEEHA  420
TKQLHAAQVY TRALYERFSK ELFKSGKFGC VDEPEGGSYR VILLDYGPYM DHGMVEYRVG  480
SNPTSTDFFC QCKRFEHCGI PCRHILKVLV HHGFTEIPPG ILLKRWTREA KAFGDPKLAA  540
VISAQQATDL DFSGMHTLLY AAAMELVGLA STSRPAFEIG MQTLSRGKQA ITALFG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J214400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK4A1350.0K4A135_SETIT; Uncharacterized protein
STRINGPavir.Hb01747.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-72FAR1-related sequence 5