PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J212800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 492aa MW: 57790 Da PI: 8.1928

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J212800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.7	5.2e-20	12	109	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +Yn+YA+++ Fs+r+++s++sk+ + k fvC+k g ++++k + +++rr+ ++rt C ++ v+k+ ++wev+++e e Pavir.J212800.1.p 12 YYNRYARHASFSIRIDTSRESKKYNDKRKVIFVCQKAGVNKKQKLDkegpitekkIVRQRRRDYVDRTRCPPRMIVRKTAPSQWEVAHFERE 103 8***************************************998899999888999999************************** PP FAR1 85 HnHela 90 HnHe++ Pavir.J212800.1.p 104 HNHECV 109 *976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-18	12	109	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.2E-22	231	316	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MTFSTPQDAR VYYNRYARHA SFSIRIDTSR ESKKYNDKRK VIFVCQKAGV NKKQKLDKEG 60 PITEKKIVRQ RRRDYVDRTR CPPRMIVRKT APSQWEVAHF EREHNHECVK KFSLTKYMKS 120 HREMPAKEKE FIKFLHGCCI TTTRAYQIMV ELYGGIENYP YTEGDAKNLR VEYRAEYRGK 180 EMKATLDHFE ELKKEDPNFI YSYTLDEFDR VENLFWVDGA ARKSYELYGD CISFDTTYLT 240 NMYNMPCAPF IGIDRNGITI QLGCGFMRNE KIEVFVWLFT EFKKAMGNKD PINIITDQDL 300 AMAAAIVQVL AMENARKRLR AFLDGKSGLA DDFNDCVDNS FSIVEFEFKW QAMLDKHEIN 360 DDERFQRLIF SKQSMHEANT TIKVPHYLTG HPVERQMKQM YTKKLFNVFQ DELQLSSSYY 420 IVRVDGDNLL DVVPYGHCPH HLYDERTFRV STNNADGLYS CDTYKFQRDG VLCCHILKVF 480 DALAVREVPC H*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MTFSTPQDAR VYYNRYARHA SFSIRIDTSR ESKKYNDKRK VIFVCQKAGV NKKQKLDKEG  60
PITEKKIVRQ RRRDYVDRTR CPPRMIVRKT APSQWEVAHF EREHNHECVK KFSLTKYMKS  120
HREMPAKEKE FIKFLHGCCI TTTRAYQIMV ELYGGIENYP YTEGDAKNLR VEYRAEYRGK  180
EMKATLDHFE ELKKEDPNFI YSYTLDEFDR VENLFWVDGA ARKSYELYGD CISFDTTYLT  240
NMYNMPCAPF IGIDRNGITI QLGCGFMRNE KIEVFVWLFT EFKKAMGNKD PINIITDQDL  300
AMAAAIVQVL AMENARKRLR AFLDGKSGLA DDFNDCVDNS FSIVEFEFKW QAMLDKHEIN  360
DDERFQRLIF SKQSMHEANT TIKVPHYLTG HPVERQMKQM YTKKLFNVFQ DELQLSSSYY  420
IVRVDGDNLL DVVPYGHCPH HLYDERTFRV STNNADGLYS CDTYKFQRDG VLCCHILKVF  480
DALAVREVPC H*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	314	320	ARKRLRA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J212800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6SLU8	0.0	A0A3L6SLU8_PANMI; Uncharacterized protein
STRING	Pavir.Eb03348.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-55	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.J212800.1.p