PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J210500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 24814.3 Da PI: 7.1511 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.1e-13 | 2 | 50 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+++N+ + Lr+l P + + k+ + a+i A+++I++Lq Pavir.J210500.1.p 2 SHIAVERNRRRQMNDHLKVLRSLTPAL---YIKRGDQASIIGGAIDFIRELQ 50 89*************************...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-15 | 1 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.11E-12 | 1 | 54 | No hit | No description |
PROSITE profile | PS50888 | 14.894 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-10 | 2 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-13 | 2 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-12 | 4 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MSHIAVERNR RRQMNDHLKV LRSLTPALYI KRGDQASIIG GAIDFIRELQ QVLESLEARK 60 RRRSSTSTSG GGFSPSPTPS PRSHLALSSS SSGCCGAPSP PVLAVRELAA CCNSPVADVE 120 ARISGANVLL RTLSRRAPGQ AAGMVALLEA LHLEVLHLNI STMEDTVLHS FVLKIGLECQ 180 LSVEDLAYEV QQTFVCFREQ QQQQDQEQQP DHQLPQENLM YSAMTI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 62 | RKRRR |
2 | 58 | 63 | RKRRRS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Strongly expressed in meristemoids and at lower levels in guard mother cells (GMCs) and guard cells. {ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267}. | |||||
Uniprot | TISSUE SPECIFICITY: Leaf epidermis and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17183265}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Together with FMA and SPCH, regulates the stomata formation. Required for the differentiation of stomatal guard cells, by promoting successive asymmetric cell divisions and the formation of guard mother cells. Promotes the conversion of the leaf epidermis into stomata. {ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J210500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV, flagellin, and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969822 | 8e-80 | EU969822.1 Zea mays clone 336092 DNA binding protein mRNA, complete cds. | |||
GenBank | KJ726969 | 8e-80 | KJ726969.1 Zea mays clone pUT3670 bHLH transcription factor (bHLH82) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815760.1 | 1e-125 | transcription factor MUTE | ||||
Swissprot | Q9M8K6 | 3e-71 | MUTE_ARATH; Transcription factor MUTE | ||||
TrEMBL | A0A2T7DSX4 | 1e-125 | A0A2T7DSX4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J25730.1.p | 1e-165 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11144 | 34 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06120.1 | 1e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J210500.1.p |