PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J202900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 24183.1 Da PI: 9.3984 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.9 | 1.4e-17 | 112 | 164 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa Pavir.J202900.1.p 112 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRAS 164 788899*********************************************96 PP | |||||||
2 | HD-ZIP_I/II | 116.3 | 1.8e-37 | 112 | 205 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA....RtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRA Rtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr Pavir.J202900.1.p 112 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRAsrarRTKLKQTEVDCEFLKRCCESLTEENRRLQRELQELR 203 69*************************************************988889**********************************9 PP HD-ZIP_I/II 89 eel 91 +l Pavir.J202900.1.p 204 -AL 205 .55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-17 | 99 | 162 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.05E-17 | 105 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.52 | 108 | 168 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-14 | 110 | 172 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.99E-15 | 112 | 170 | No hit | No description |
Pfam | PF00046 | 5.8E-15 | 112 | 164 | IPR001356 | Homeobox domain |
CDD | cd14686 | 0.00808 | 159 | 204 | No hit | No description |
SMART | SM00340 | 1.2E-23 | 172 | 215 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.4E-11 | 172 | 206 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAQEDVHLDD AGLALDLSLG GGGASDAARR QGTGGRLGRD AARLPPSPRA LEPSLTLSMP 60 DEATATGSGG GAAHSVSSPP AAGVKRERVE EADGERASST ARAEDDDDGS TRKKLRLTKE 120 QSALLEDRFK EHSTLNPKQK VALAKQLNLR PRQVEVWFQN RRASRARRTK LKQTEVDCEF 180 LKRCCESLTE ENRRLQRELQ ELRALKFAPP GPGPPPPPAT APAP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 116 | TRKKLRL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J202900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797738.1 | 1e-114 | homeobox-leucine zipper protein HOX19-like isoform X1 | ||||
Swissprot | A2XE76 | 8e-75 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 8e-75 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | A0A2S3ISP9 | 1e-112 | A0A2S3ISP9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CFD7 | 1e-112 | A0A2T7CFD7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J25440.1.p | 1e-157 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 4e-46 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J202900.1.p |