PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J169400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 285aa MW: 29230.5 Da PI: 4.4044 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 43 | 94 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a+++l+g+ Pavir.J169400.1.p 43 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 94 5799******.**********843...4*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.25E-28 | 43 | 101 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.5E-29 | 44 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-21 | 44 | 101 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.562 | 44 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-32 | 44 | 107 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-10 | 44 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MNFSSYFFSS SSSSSSSADK KSSSSSSKRR QQPQAPQPDA NTTRYLGVRR RPWGRYAAEI 60 RDPATKERHW LGTFDTAEEA AVAYDRAARS LRGARARTNF AFPDLPPGSS VTPYLSPDLT 120 SGDNAGQLLQ PFYADPAAAS LPAAAHAASG GGGGAGYGAA GDYASYGGGY SAEDMSALMD 180 DLAIPDDLPA DDYYGVNAGG AMDQLSSVYG GVASNASAAA GGWCDSSEFS AYGGAPSAAA 240 AAASHGVYFE EGYVHSPLFS PMPAADDACA DGFQLGGSSS SYYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-18 | 45 | 100 | 6 | 62 | ATERF1 |
3gcc_A | 5e-18 | 45 | 100 | 6 | 62 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.27933 | 1e-33 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J169400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975472.1 | 1e-128 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | K3YEC4 | 1e-126 | K3YEC4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J16868.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 2e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J169400.1.p |