PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J162300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 26155.1 Da PI: 10.9419 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.8 | 2.5e-10 | 188 | 217 | 1 | 30 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ Pavir.J162300.1.p 188 QRMTHIAVERNRRRLMNDHLASLRSLIPSS 217 79**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.32E-8 | 179 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.96E-7 | 186 | 218 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.6E-9 | 186 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.302 | 187 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-7 | 188 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEIYQSKLNR GSTTLYSAGC CCYRSTIFIA LVAPTAATRG GARRGGGLQQ VAVAAAAASG 60 RGSLLVAAVI AAAVMERMQL QGPIASSSLW AADQQAAPST SSQMPFLALL QGAGVVVEDG 120 RKRNAALERA ADLDRLESCV TQAAAAGDPA VALPPATRAE RRRKRPRPRT RAAPPPEKRR 180 KPEEAESQRM THIAVERNRR RLMNDHLASL RSLIPSSYIP RVSHCPCMHG HANICSPIPY 240 PTISV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 170 | RRRKRPRPRTR |
2 | 162 | 168 | RKRPRPR |
3 | 162 | 180 | RKRPRPRTRAAPPPEKRRK |
4 | 163 | 167 | KRPRP |
5 | 188 | 199 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J162300.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC098695 | 1e-78 | AC098695.2 Oryza sativa Japonica Group chromosome 3 clone OJ1126B12, complete sequence. | |||
GenBank | AC210491 | 1e-78 | AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence. | |||
GenBank | AP014959 | 1e-78 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-78 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798239.1 | 4e-53 | transcription factor bHLH57-like | ||||
TrEMBL | K7WHF4 | 1e-63 | K7WHF4_MAIZE; BHLH transcription factor (Fragment) | ||||
STRING | Pavir.J23098.1.p | 1e-120 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7957 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 1e-12 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J162300.1.p |