PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J140600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 106aa MW: 11549.6 Da PI: 9.5819 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 22 | 68 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+ +++ +a + + + +W+ +ar+mg +++ +++ ++ ++ Pavir.J140600.1.p 22 WTQRQNKQFECALAVYDREtpdRWHNVARYMGGAKSADEVRRHFEQL 68 *****************88*************999********9775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.8E-5 | 18 | 71 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.39E-10 | 20 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-5 | 22 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MASGGGSSSS NSSRGSSSSR GWTQRQNKQF ECALAVYDRE TPDRWHNVAR YMGGAKSADE 60 VRRHFEQLVA DVAQIEAGRV PFPRYAADDD AAAATSSRTK YLKFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-23 | 12 | 105 | 3 | 93 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J140600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728246 | 2e-94 | KJ728246.1 Zea mays clone pUT6523 MYB-related transcription factor (MYBR57) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809060.1 | 3e-45 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 4e-26 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A3L6SWR0 | 1e-46 | A0A3L6SWR0_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J17245.1.p | 3e-72 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 5e-27 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J140600.1.p |