PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J138200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 324aa    MW: 35724.9 Da    PI: 5.4005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J138200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.25.1e-071632021255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pavir.J138200.1.p 163 RRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 202
                        9******************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-13143218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-9143206No hitNo description
Gene3DG3DSA:4.10.280.109.0E-14145218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-5151207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.868151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-4163202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MYSGQQSDQC PSANSGREFS EANWNTVTMH QKMGYDSGLY GFGPYSMGLE ERPGLYQSSS  60
GAFSQNIQMS DEHSGGVKKR KGMDYCVAML QNAGDHQTEG SSQPERNSLE EGNRKISPKM  120
QSKEDSSDGD GTKEDYVHVR AKRGQATNSH SLAERVDFSL VLRRKKISER MKLLQDLVPG  180
CSKITGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPELG FDIEQILSKQ MMLSQDRHFV  240
FYGADPGSSS LASQFNQGIM QPEMMCNISN PADVLQGTIH DVSTMNQIPA SWEGLQNLPQ  300
MNFNPGVATD SSANNSGSMK IEQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J138200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353481e-173BT035348.1 Zea mays full-length cDNA clone ZM_BFb0057A01 mRNA, complete cds.
GenBankEU9745041e-173EU974504.1 Zea mays clone 450957 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796141.10.0transcription factor bHLH74-like
SwissprotQ6NKN92e-50BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A3L6S4S40.0A0A3L6S4S4_PANMI; Transcription factor bHLH49-like
STRINGPavir.J24659.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.17e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]