PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J125500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 194aa MW: 19253.6 Da PI: 10.8759 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.8 | 1.9e-34 | 40 | 125 | 9 | 89 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg....k 89 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++sss ++ + k Pavir.J125500.1.p 40 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssapSTSSSSHYHQ----QtvlgK 125 89*******************************************************99999555221111111111111....111221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.009 | 39 | 93 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.0E-31 | 39 | 118 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
PAGAVHGHAR AAAAAAAADG GGAMAVVPAK PVKKEGGGGK DRHSKVNGRG RRVRMPIVCA 60 ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFVSSSAPS TSSSSHYHQQ 120 TVLGKRPREE GDAAGAAAAA SAFWAALPAA AADDGGLGLL AAGGAGGGRA HHHHLNLLAA 180 LSGAARRAEE ETR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J125500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095725 | 1e-136 | FP095725.1 Phyllostachys edulis cDNA clone: bphyem123a10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953208.1 | 5e-74 | transcription factor TCP21-like | ||||
Swissprot | Q9FMX2 | 2e-38 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A368PNU6 | 1e-72 | A0A368PNU6_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Aa01258.1.p | 1e-97 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 4e-33 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J125500.1.p |