PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J122500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CO-like | ||||||||
Protein Properties | Length: 238aa MW: 25825.5 Da PI: 8.3258 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.9 | 1.3e-05 | 5 | 40 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg...H 37 C+ + + ++ fC C+ lC C + H H Pavir.J122500.2.p 5 ACQSCATHDAIVFCLLCGARLCLPCDAALHAAaglH 40 69****999*****************9999556666 PP | |||||||
2 | CCT | 50.6 | 7e-18 | 167 | 211 | 1 | 44 |
CCT 1 ReaallRYkeK.rktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re+a+lRY eK +k+R+F K+i Y+sRKa+A++R+RvKGrF+k++ Pavir.J122500.2.p 167 RERAKLRYAEKkKKNRRFCKQIMYASRKARADTRKRVKGRFAKAS 211 99******9862579***************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.599 | 1 | 45 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.6E-12 | 167 | 210 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.352 | 168 | 210 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MPLSACQSCA THDAIVFCLL CGARLCLPCD AALHAAAGLH PRARLCDKCN LAPAALRCDD 60 VTLCAGCAGH GPPASALVAQ YTGCPAPKDL VRIISTETPP QQDALEVWIA DKLLEDDAGQ 120 LMEAGWDVAE ETAKLEKMLS DLSSSSALVA PSQSCLIRTD DKKRQERERA KLRYAEKKKK 180 NRRFCKQIMY ASRKARADTR KRVKGRFAKA STTSQDPHSY NPVHDDPSNT DKGETRS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 179 | KKRQERERAKLRYAEKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J122500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810511.1 | 1e-115 | zinc finger protein CONSTANS-LIKE 12-like | ||||
TrEMBL | A0A3L6PIK6 | 1e-119 | A0A3L6PIK6_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J21550.1.p | 1e-173 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15250.1 | 1e-17 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J122500.2.p |