PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.J121100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 179aa MW: 19550.7 Da PI: 8.651 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 126.6 | 3.1e-39 | 52 | 164 | 2 | 115 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaeaagssasaspes 92 +s r+pt +ErEnn++RERrRR++aa+i+a LRa+++y lpk+aD+n+Vl+ALc+eAG+ v+dDG++ r +g a+ +s++ ++ s Pavir.J121100.1.p 52 TSLRHPTPRERENNRQRERRRRQVAARIFACLRAHAGYTLPKHADQNDVLRALCAEAGYYVDDDGNVTRlQGVVD--GAAGPRCSSDHQKPS 141 789******************************************************************445444..467777777777777 PP DUF822 93 slqsslkssalaspvesysaspk 115 s + ++++ +l+ p + + ++ Pavir.J121100.1.p 142 SHSGTTEAVTLQQPEQRREEEEE 164 76767777777777766655544 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.2E-29 | 54 | 136 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 179 aa Download sequence Send to blast |
MEVGAGRDEV EAAAAAVVAT EVAPVSGRRG CIRSTQGPWT VRRRGRGGGL TTSLRHPTPR 60 ERENNRQRER RRRQVAARIF ACLRAHAGYT LPKHADQNDV LRALCAEAGY YVDDDGNVTR 120 LQGVVDGAAG PRCSSDHQKP SSHSGTTEAV TLQQPEQRRE EEEEAKLSLE LTLSFAYM* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.J121100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU947756 | 1e-104 | EU947756.1 Zea mays clone 356679 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971713.1 | 8e-77 | protein BZR1 homolog 3-like | ||||
TrEMBL | A0A368R3Z7 | 2e-75 | A0A368R3Z7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J23744.1.p | 1e-127 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13201 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19350.6 | 1e-13 | BES1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.J121100.1.p |