PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J117800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 339aa MW: 36919.8 Da PI: 8.0776 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.9 | 7.8e-18 | 57 | 106 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lre+lP++ ++K +Ka+ L +++eYI+ Lq Pavir.J117800.2.p 57 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 106 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.5E-24 | 54 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.888 | 55 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-19 | 55 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.78E-15 | 57 | 110 | No hit | No description |
Pfam | PF00010 | 2.5E-15 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-13 | 61 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MDVGSRSSGG AGFDDDDGLA ARREVSSTLK ELSVRVETKG GSCSGSAGTD QLPNTPRSKH 60 SATEQRRRSK INDRFQILRE ILPQNDQKRD KASFLLEVIE YIRFLQEKVQ KYEVSNPEWN 120 QENAKIVPWS NIYFRSSWKN LQNKDEINGD MASDPSQVIK NGLSPRFPFA AKPEDHNNAG 180 AFETASGAQE LAEPKGCVPF KPAETPSKIT NTVASQQPTQ LTNPLPSDDC AAPNGMLSNP 240 ELAIDEGTIS LSSQYSQGLL TTLNLALQNS GIDLSQASIS VQINLGKRAT KRSAPGSNST 300 SKNLINQASR DQEIGHQLRS GDGAREHSQA TKRHKSDR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1464 | 1e-103 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J117800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070237 | 1e-119 | AK070237.1 Oryza sativa Japonica Group cDNA clone:J023047A01, full insert sequence. | |||
GenBank | AK100183 | 1e-119 | AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence. | |||
GenBank | HQ858865 | 1e-119 | HQ858865.1 Oryza sativa Japonica Group isolate UT1674 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822755.1 | 0.0 | transcription factor BIM2-like isoform X2 | ||||
TrEMBL | A0A2T7D8X5 | 0.0 | A0A2T7D8X5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6RH25 | 0.0 | A0A3L6RH25_PANMI; Transcription factor BIM1-like | ||||
STRING | Pavir.J38910.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 4e-57 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J117800.2.p |