PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J117800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 417aa    MW: 45622.1 Da    PI: 9.1362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J117800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.51e-17135184255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Pavir.J117800.1.p 135 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 184
                        889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-23132205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.888133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-19133207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-15135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-15135188No hitNo description
SMARTSM003535.5E-13139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MELRHCCPPC VAAPGLLHRA IELRHCCRLS PAPEKIMWKK SHPWSLPFAA RCVAVASARP  60
QPQQQQQRPP ERKAGGGFMD VGSRSSGGAG FDDDDGLAAR REVSSTLKEL SVRVETKGGS  120
CSGSAGTDQL PNTPRSKHSA TEQRRRSKIN DRFQILREIL PQNDQKRDKA SFLLEVIEYI  180
RFLQEKVQKY EVSNPEWNQE NAKIVPWSNI YFRSSWKNLQ NKDEINGDMA SDPSQVIKNG  240
LSPRFPFAAK PEDHNNAGAF ETASGAQELA EPKGCVPFKP AETPSKITNT VASQQPTQLT  300
NPLPSDDCAA PNGMLSNPEL AIDEGTISLS SQYSQGLLTT LNLALQNSGI DLSQASISVQ  360
INLGKRATKR SAPGSNSTSK NLINQASRDQ EIGHQLRSGD GAREHSQATK RHKSDR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.14641e-171root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J117800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822755.10.0transcription factor BIM2-like isoform X2
TrEMBLA0A3L6RH250.0A0A3L6RH25_PANMI; Transcription factor BIM1-like
STRINGPavir.J38910.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-56BES1-interacting Myc-like protein 2