PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J071100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 22275.2 Da PI: 8.5882 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.6 | 7.1e-06 | 81 | 120 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 RR++i +++ L++l+P + sk Ka +L + ++Y++sL Pavir.J071100.1.p 81 VRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSL 120 6******************9....556**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.09 | 70 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-9 | 80 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-9 | 80 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.89E-6 | 82 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MRAKKCKLST DAADDEERKP AAGDAGRSNG KGKEVAAEPP KDYIHVRARR AKPRTATASP 60 SGYAAGEHII HVVADADCLQ VRREKISERM KLLQDLVPGC SKVTGKAVML DEIINYVQSL 120 PFTTAYAAQA NQPCTPAASS LAPPPPVYSL EGSSAPLCYA SSQGATVPSV VTSAKSFVTS 180 STFVNHHIPD HSIEGFQNAN SQVCQHFVR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J071100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798622.1 | 3e-80 | transcription factor BHLH089-like | ||||
TrEMBL | A0A1E5V1J9 | 1e-85 | A0A1E5V1J9_9POAL; Transcription factor bHLH77 | ||||
STRING | Pavir.J14571.1.p | 1e-153 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13313 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 2e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J071100.1.p |