PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J070100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 462aa    MW: 52703.6 Da    PI: 7.7343
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J070100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS47.14.1e-151822812117
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL++cA+av+++++  a++lL+++++ as +gd++qR+a++    L + l+            +++    + e l+a+kl++ ++ + k+
  Pavir.J070100.1.p 182 RTLLISCAHAVATNNHIGASKLLKQIKQYASATGDATQRVAHCSQ--LWQLLMA----------ERPS----TLEFLKAYKLYYVACCFKKV 257
                        789**************************************9853..5555544..........3333....5899**************** PP

               GRAS  94 shltaNqaIleavegeervHiiDf 117
                        +      +Il+a+ g++++Hi+D+
  Pavir.J070100.1.p 258 ALSYSTMTILQAMVGKRKLHIVDY 281
                        ***********************8 PP
2GRAS107.81.5e-33283461137328
               GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAeelgv.pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
                        +g p+++iT++g+p+ +   +e++ee+g rL+k A+e+g+ +f+f++ ++k++ed+++e+L+++ +E+l+Vn  ++  +l+desv ++    
  Pavir.J070100.1.p 283 GGLPEVKITAIGPPKLKscLAERIEELGCRLKKWANEFGLdSFKFHT-IMKKWEDVHIEDLNTDIDEVLVVNDFFSFSTLMDESVFVDR--- 370
                        6789*********99998899*******************56*****.7********************************88888888... PP

               GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                              +sl   ++     ++++ ++sFl+rf e ++yy+alfd l+a++pres+ r+++E+++lgr + n++a eg + ++r e++++W+ 
  Pavir.J070100.1.p 371 ------QSLGISIL-----NCSC-GSSFLTRFREVMSYYMALFDILDATMPRESKSRAVLEQFVLGRPALNIIAGEGLDLVQRPEKYRQWQV 450
                        ......67766665.....5666.679***************************************************************** PP

               GRAS 318 rleeaGFkpvp 328
                        r ++aG++++p
  Pavir.J070100.1.p 451 RNQRAGLRQLP 461
                        *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.562155462IPR005202Transcription factor GRAS
PfamPF035141.4E-12182281IPR005202Transcription factor GRAS
PfamPF035145.1E-31283461IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MMLPYISRVL LEDDLDDNKL NDHPALLQVQ QPFAQILSSS SYGANTANTD GAKHLLQDGR  60
DDESTLNHNS ALSMGTYIVQ VFLKGMEEAN MLLPRDNKFR GDKRYNRDHH MEEETRTSKA  120
AKTIMDQEEN CANEMLNEMM LHAYETCIRG MEELRVSMDN KVEKENRKKR NKAAKGNVVD  180
IRTLLISCAH AVATNNHIGA SKLLKQIKQY ASATGDATQR VAHCSQLWQL LMAERPSTLE  240
FLKAYKLYYV ACCFKKVALS YSTMTILQAM VGKRKLHIVD YKGGLPEVKI TAIGPPKLKS  300
CLAERIEELG CRLKKWANEF GLDSFKFHTI MKKWEDVHIE DLNTDIDEVL VVNDFFSFST  360
LMDESVFVDR QSLGISILNC SCGSSFLTRF REVMSYYMAL FDILDATMPR ESKSRAVLEQ  420
FVLGRPALNI IAGEGLDLVQ RPEKYRQWQV RNQRAGLRQL PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-171854628328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J070100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677891.10.0scarecrow-like protein 34 isoform X1
RefseqXP_008677892.10.0scarecrow-like protein 34 isoform X2
TrEMBLA0A3L6Q2650.0A0A3L6Q265_PANMI; GRAS transcription factor
STRINGPavir.J40967.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.13e-61GRAS family protein