PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J067400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 240aa MW: 26335.9 Da PI: 7.1372 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 99 | 158 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT.......TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...........tWktIartmg.......kgRtlkqcksrw 44 +W++eE ++l a ++ ++ +Wk++a++++ +R+ kq+k +w Pavir.J067400.1.p 99 NWSEEENDRLFSAWIKHSTDpligtdrkmeyHWKAVAAEFNenapknsHKRSVKQLKTHW 158 8***********************************************88********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.098 | 96 | 162 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-4 | 96 | 161 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00347 | 99 | 158 | No hit | No description |
Pfam | PF13837 | 2.7E-6 | 99 | 166 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
NFNPFGPTGI HPPYGHSPPI FQGVQQPGSW LQAHPPSSQG FYLHESVGPL GATAANRPQS 60 VLQFAHFGEA AANTSFHGTE SKSSDSSEEG EPKMCQRINW SEEENDRLFS AWIKHSTDPL 120 IGTDRKMEYH WKAVAAEFNE NAPKNSHKRS VKQLKTHWGD VKRDITKFSG AYARAMSARS 180 SGQSDDMVLQ TAKELFKGAN KGQGEHAKRT KLSNSEAYTS SSNQDTEGET MSTEVRPEG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J067400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025877399.1 | 5e-59 | uncharacterized protein LOC107276439 | ||||
TrEMBL | A0A1Z5S8G6 | 1e-89 | A0A1Z5S8G6_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ca02274.1.p | 1e-101 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP449 | 6 | 10 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J067400.1.p |