PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J046800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 192aa    MW: 19556.6 Da    PI: 4.1281
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J046800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-114421353
                AP2 13 grWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                       grWv+e+r+p ++g  +r +lg++  ae Aa+a++aa+++l
  Pavir.J046800.1.p  4 GRWVCEVRVPGNRG--ARLWLGTYVAAEAAARAHDAAMLAL 42
                       9********95554..**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.87154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-19356IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-10456IPR016177DNA-binding domain
PfamPF008471.4E-6442IPR001471AP2/ERF domain
SMARTSM003802.2E-8460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
GAAGRWVCEV RVPGNRGARL WLGTYVAAEA AARAHDAAML ALGRGGSGAG LNFPDSAWRL  60
ALPPPSALPS LDDARRAALE AVADFQRRSG ANDSAAAAVD KATSSMSAPP PLPGISGSLA  120
TSLEHVPAEA DETAALDGGA FEPDWFGDMD LDTYYASLAE GLLMEPPPPP AAAWEHGDFG  180
DGGADVALWS Y*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J046800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4504814e-81AF450481.1 Zea mays DREB-like protein (DREB1A) mRNA, complete cds.
GenBankAY9647184e-81AY964718.1 Zea mays cultivar Qi319 CBF3-like protein (CBF3) mRNA, complete cds.
GenBankAY9669024e-81AY966902.1 Zea mays CRT/DRE binding factor (CBF3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957402.11e-99dehydration-responsive element-binding protein 1H
SwissprotA2Z3881e-47DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
SwissprotQ0J0901e-47DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBLA0A3L6QVE31e-102A0A3L6QVE3_PANMI; Dehydration-responsive element-binding protein 1H-like
STRINGSi030869m5e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261