PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J019300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 24368.7 Da PI: 12.1877 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.6e-12 | 55 | 100 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N +f Lr +P+ +++Ka+ L A YI +L Pavir.J019300.1.p 55 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 100 89************************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.288 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-16 | 53 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.53E-11 | 54 | 104 | No hit | No description |
Pfam | PF00010 | 9.6E-10 | 54 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-16 | 55 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-10 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
SSPCSRRRLS RRRLLSRRRR RSRSRSRAPR SRRRRSGRGS GGPEARARPE APTVSHVEAE 60 RQRREKLNRR FCDLRAAVPT VSRMDKASLL ADAAAYIAEL RARVARLEAE ARRAAAARWE 120 PVVAASRGGA PPGGAPPGRG DEAVEVRMLG PDAASVRATS AAPHASARLM GALRSLELHV 180 QHACVTRVHG LTVQDVVVDV PAQLQDDDGL RAALVQVLQE QDSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-20 | 54 | 110 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-20 | 54 | 110 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-20 | 54 | 110 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-20 | 54 | 110 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-20 | 54 | 110 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-20 | 54 | 110 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-20 | 54 | 110 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-20 | 54 | 110 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 26 | RRRRRSRSRSR |
2 | 18 | 26 | RRRSRSRSR |
3 | 18 | 34 | RRRSRSRSRAPRSRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J019300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804315.1 | 1e-87 | transcription factor MYC2-like | ||||
TrEMBL | A0A3L6QNX7 | 9e-91 | A0A3L6QNX7_PANMI; Transcription factor MYC2-like | ||||
STRING | Pavir.J40111.1.p | 1e-139 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 1e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J019300.1.p |