PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J012700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 816aa    MW: 93567 Da    PI: 9.5292
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J012700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.82.7e-2148135291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        f++ YA++ GF ++k++ +ks+ +g+  k+ fvC+k+gk   +++   +++r+++  +t+Ck  ++vk e +++w +t ++leHnH lap
  Pavir.J012700.1.p  48 FFKLYARKSGFAIKKNTAYKSRITGNLDKQIFVCNKSGKGVLNEEP-GRKKRSNVILKTECKVLVRVKFE-SNQWIITAVNLEHNHVLAP 135
                        9*****************************************9999.99********************9.99*************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1848135IPR004330FAR1 DNA binding domain
PfamPF105512.6E-30257349IPR018289MULE transposase domain
PROSITE profilePS509669.644540576IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MPEPPTHDEV EMENMFDEMN YPTIAEIESA REPEVGMCFK TREEAFHFFK LYARKSGFAI  60
KKNTAYKSRI TGNLDKQIFV CNKSGKGVLN EEPGRKKRSN VILKTECKVL VRVKFESNQW  120
IITAVNLEHN HVLAPSIWLV RFMKCHKHMS PSEKRFISIL QDSRVPPRKV MSIFRMLRGH  180
LRAVGFDAKD VSNLKTEENK KHRNKDVDEL LAMFRERQQK IPGFYYSLQT DGDGTVRSVF  240
WTDAVGRSNY KVYGDYMSFD TTFSTNVYDM PFAPFIGVDN HGKTILFGCA LLRDQTTETF  300
EWLFDTFIAA HNGKTPGAII TDQDQSIGNA LDSKFPMAVR RFCFWHIMKV LKQKNISYFK  360
ARKGLYKGFK LAVRNSFTPQ EFEDKWKQVL MEFNAHDNNR INYLYNIRSY WVPAYFMESF  420
YPFSSTTGRS ESTNAMFKGY VAHKDTIVNF FGAYESIQEK NLSTLDRCRY TSELKYPSQW  480
SYNGLEEHAA SVYTNAIFQK VQNELKKGTA YGVVEVVKDR LFKVSRKVGY RDPEFEKENY  540
TVHVLGDRET FVCSCRKIDR DGIHCCHVWK IAERMDLLSV PSSFVRYRWT KAADQDVSLT  600
AGQEMIIGGS KSSDAIQYCI MMADVSNFCS SIAGDQKAVE LFAREFDVPI RMDDAVNAQD  660
ATTGHDGDAP SDKTTLKDPP RTTRKGPTKR KISFVEQALN AIDSKKSRQQ RTKKPPIKRC  720
TKCKSPSHDR KSCPEVGKMS QLPQVIGKKK TCSKFIFFHL VFFCEEREIL TNLYSNEKIG  780
EKTVQAMIKR SVGIGNMQEA GDAQRSTSQR GVGGC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J012700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319334.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5RF970.0A0A1Z5RF97_SORBI; Uncharacterized protein (Fragment)
STRINGPavir.J38677.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-90FAR1-related sequence 5