PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG852600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 37364.1 Da PI: 5.3951 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.7e-12 | 131 | 179 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq Pavir.9NG852600.1.p 131 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 179 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.37E-12 | 126 | 183 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-17 | 126 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-18 | 128 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.796 | 128 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-9 | 131 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-10 | 134 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MYSPPCTDPE SEDNQCFAIG TNLLASLDHG MDFDGPIVFP MNNVGVQEGV QLYNSAGDTQ 60 LSRNMNTGRC LKGGKRKGSG EDSSSLHSID ETGALLQREV SMECPDEKPG DAGTNREDYV 120 HVRAKRGQAT NSHSLAERFR REKINERMKL LQDLVPGCNK ITGKAMMLDE IINYVQSLQR 180 QVEFLSMKLS AISPELNRDL DLRDILCSQD AHAAFQGYSP QLSSVHLNLF RASQQGFSRP 240 EPYGMTPNPA NVHVARPVQQ LLQLPAFPQR GVVWDEEHRT IAPDAFTSDV GAGALENSCA 300 FPASPPLPCS AFFLQAAAAF NFVKFLKVHF DVTDSMKVE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.42477 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG852600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062216 | 0.0 | BT062216.1 Zea mays full-length cDNA clone ZM_BFb0227P23 mRNA, complete cds. | |||
GenBank | KJ726792 | 0.0 | KJ726792.1 Zea mays clone pUT2278 bHLH transcription factor (bHLH3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796809.1 | 0.0 | transcription factor bHLH137-like isoform X1 | ||||
TrEMBL | A0A2T7CFE6 | 0.0 | A0A2T7CFE6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05268.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4536 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 2e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG852600.1.p |