PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG849600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 766aa    MW: 84862.1 Da    PI: 6.1875
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG849600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.1e-095193347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +WT +E+e + +a +q G++ +++I ++++  +   q++++++ +
  Pavir.9NG849600.1.p 51 AWTRQEEENFFNALRQVGKN-FEKITHRVQ-SKNKDQVRHYYYRL 93
                         6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-104497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-54696IPR009057Homeodomain-like
PROSITE profilePS5129313.1674798IPR017884SANT domain
SMARTSM007175.1E-74896IPR001005SANT/Myb domain
PfamPF002499.5E-75193IPR001005SANT/Myb domain
CDDcd001678.99E-75194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MEEEVRGELN PLLQTIEFAP STSDPNQKLD LVQPSDPNQK PAKKPTRQWA AWTRQEEENF  60
FNALRQVGKN FEKITHRVQS KNKDQVRHYY YRLVRRMKKL LGPGFLLDAK NSKDTIAAML  120
RWWSLLEKFS CSASKLHLKP RRFKTFVEAL VNQLQKDRNK SRRKCPRVDM CISSPSPIVS  180
KSPGNESFPV KFLPVEAQNG SRVASPKGAF FKRMPETNCS KSGVTKGDLS ATRTVKQKRR  240
AGGVVASAAY KKWERAAMAG VSLVADAAEE LERNAINPGV LCNVDARTLA SSSDKLSTVD  300
GISTNQMKEA DSQAPAKLKL QLFPINESTR KALEKDEHNP HLELTLSSRK KISSVLEHLN  360
RKWGNSNIAS GELILFPYCA HQEDLAIYQR WTTRDTVAVA DVFLSVNSPS VFRLRYGWFS  420
LVELEAGVSE ISLTHFENCM IPEDIQVKSP SGDKACVQKD GTLLSNSILE QYPCSSKDQS  480
ALLHITPSCT GKNTELPEQP TSAPPSQFGS QKQVQAPVTQ AFEDDQGMNC AAISEGEWAD  540
TLTDISVGYL LTETSNGAHL DCIGTSSIKN DLFLENPCSY DSFDAAVALH VSRFQASEQP  600
ARTPHSTIWG AEETCDGFSF NLSASRNQEG SNTPSSSSPD TDNEAHPLHS EGFKGFLQDL  660
TGGEAAGDNP YNDDAKDREE LCAKSPPRNE DTNELKDQSL ADIYWPDSLG PLDLDIPSVR  720
YRADDLLIGD SQNSWNRMMA NSLDAFRNLS FFSSVDKNDS IPSIM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.184930.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG849600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796637.10.0TSL-kinase interacting protein 1 isoform X1
RefseqXP_025796638.10.0TSL-kinase interacting protein 1 isoform X1
TrEMBLA0A2S3ISL10.0A0A2S3ISL1_9POAL; Uncharacterized protein
STRINGPavir.J22108.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.21e-171TSL-kinase interacting protein 1