PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG846000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 243aa    MW: 26253.7 Da    PI: 8.6706
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG846000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-162268148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         + +WT+eEd  l + v+ +G+ +W++I++ ++ gR +k+c++rw ++l
  Pavir.9NG846000.1.p 22 KSAWTKEEDAALREQVRAHGPQNWAAISAALP-GRNPKSCRLRWCQHL 68
                         579*****************************.***********9986 PP
2Myb_DNA-binding461.2e-1477119347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T+eEd++++ ++++++++ W+tIa  ++ gR+++ +k+rw+++
  Pavir.9NG846000.1.p  77 PFTPEEDDKIAGLHRLYPNK-WATIAGFLP-GRSDNAIKNRWNSV 119
                          79******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.1961772IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-192070IPR009057Homeodomain-like
SuperFamilySSF466898.8E-3020116IPR009057Homeodomain-like
SMARTSM007175.0E-162170IPR001005SANT/Myb domain
PfamPF002492.7E-152268IPR001005SANT/Myb domain
CDDcd001677.00E-152468No hitNo description
SMARTSM007174.9E-1174122IPR001005SANT/Myb domain
PROSITE profilePS5129415.81976124IPR017930Myb domain
PfamPF002493.1E-1377120IPR001005SANT/Myb domain
CDDcd001678.94E-1177120No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1877120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAMQDEEAEA GAGGVRPVAM KKSAWTKEED AALREQVRAH GPQNWAAISA ALPGRNPKSC  60
RLRWCQHLTP GVDAVRPFTP EEDDKIAGLH RLYPNKWATI AGFLPGRSDN AIKNRWNSVL  120
GRQPQPQHQQ WALAAPLRRV SDRTLPLFPQ ASGDVRAIAR STWVLRHPPP GDAGADSSGA  180
CLKLFPLAPG DLVGANDTSE GAEMDVDRSD DDPTATGLRL WPCTRATSMA AFKAMVQTVR  240
AP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A1e-26221232102MYB3
3zqc_D1e-26221232102MYB3
3zqc_G1e-26221232102MYB3
3zqc_J1e-26221232102MYB3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG846000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798530.11e-138myb-related protein 308-like
TrEMBLA0A3L6SC901e-143A0A3L6SC90_PANMI; Uncharacterized protein
STRINGPavir.J02742.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-36myb domain protein 77