PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG827800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 300aa    MW: 32369.8 Da    PI: 4.6988
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG827800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.4e-1992147256
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+++++t+eq++eLe  Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  Pavir.9NG827800.1.p  92 RTKRRLTAEQVRELELSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 147
                          77889**************98**********************************9 PP
2HD-ZIP_I/II117.38.6e-3893184292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           krrl++eqv+ LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d+++L++a+d+l + +++L +++++Lr++
  Pavir.9NG827800.1.p  93 TKRRLTAEQVRELELSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFNRLRAAHDELLAGRDALLADNDRLRSQ 182
                          69****************9999******************************************************************99 PP

          HD-ZIP_I/II  91 lk 92 
                          + 
  Pavir.9NG827800.1.p 183 VI 184
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.18E-1783151IPR009057Homeodomain-like
PROSITE profilePS5007117.76788149IPR001356Homeobox domain
SMARTSM003896.7E-1690153IPR001356Homeobox domain
CDDcd000867.42E-1492150No hitNo description
PfamPF000464.5E-1692147IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1898148IPR009057Homeodomain-like
PRINTSPR000313.1E-6120129IPR000047Helix-turn-helix motif
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PRINTSPR000313.1E-6129145IPR000047Helix-turn-helix motif
PfamPF021833.0E-13149191IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDSGRNMISS VAPFRAAGEG GGQVFLFGGG GGGGFLRSAP VVGAAGAADG WRRRKRPFQL  60
TAAHEELQLQ LELGDDELAG FDYELHGGPQ ERTKRRLTAE QVRELELSFE EEKRKLEPER  120
KSELARRLGI APRQVAVWFQ NRRARWKAKQ LEQDFNRLRA AHDELLAGRD ALLADNDRLR  180
SQVITLTDKL QAKESSVPAT ALKAATYASF EQDQLCTETA TTAGAAPAAG YTGGAGDSPE  240
SYLAGARSPP SSSEDDCGGG DGDDGAFFLP NPDMLLAAAA EEDGAQLSNW AWLWNEQQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RRARWKAKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG827800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568501e-103AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804293.11e-140homeobox-leucine zipper protein HOX25-like
SwissprotA3BYC13e-75HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A2T8KQ941e-139A0A2T8KQ94_9POAL; Uncharacterized protein
STRINGPavir.J04192.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-30homeobox 1