PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG821300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 537aa    MW: 59604.2 Da    PI: 6.466
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG821300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.37.5e-1251655351373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++++++c +av++ ++   +al+++l++++s +g+pmqRl ay++e+L arl+ +++ lyk+l+++e    +sse +++++l+++++P+
  Pavir.9NG821300.1.p 165 LRQVIIACGKAVDE-NAWYMDALMSELRQMVSVSGEPMQRLGAYMLEGLIARLSFTGHALYKSLKCKEPV-ATSSELMSYMHLLYDICPF 252
                          67899*******98.77889************************************************97.789999************* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +kf+++ aN aI eav+ge+ +HiiDf+i qG QW++++qaLasRp+    lRiTg+++++s   +   l  +g+rL+++A+++g+pfef
  Pavir.9NG821300.1.p 253 FKFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWMTMIQALASRPGRRLFLRITGIDDSNSAhaRGGGLDIVGQRLHSIAQSCGLPFEF 342
                          ***********************************************************8888889999********************* PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+ v  + +++ +e+L ++pgEa++Vn+++qlh+++desv +e++rd++L++vkslsP+vv++veqea++n ++F+ r le+l+yy+a+f
  Pavir.9NG821300.1.p 343 NP-VPAASHEVMYEHLCIRPGEAIVVNFAYQLHHTPDESVGIENHRDRILRMVKSLSPRVVTLVEQEANTNMAPFFLRYLETLDYYTAMF 431
                          **.79999999******************************************************************************* PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +++++  pr++++ri+ E+++++r+ivn+vacegaer+erhe ++kWr+rl +aGF+p+pls  +++++k+ll  ++s  yr+ee++g l
  Pavir.9NG821300.1.p 432 EAIDVARPRDDKKRISAEQHCVARDIVNLVACEGAERIERHEPFGKWRARLAMAGFRPYPLSPVVNSTIKTLLDSYHSY-YRLEEKDGVL 520
                          *****************************************************************************66.********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +lgWk+r+Lv+ SaW
  Pavir.9NG821300.1.p 521 YLGWKNRKLVVSSAW 535
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.953139517IPR005202Transcription factor GRAS
PfamPF035142.6E-122165535IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MSTQASNRSY GYPDNTQIPY YDGNLVPVGG NGTYYMPKNH DDGHHVSSDD GLQTSNSRAQ  60
GFQAQYCTLD SSSANCVYPA HSSTSSQSQS GSPQSQQESH SDHAYGSSPS ASCVTHVPSW  120
TLKDLENVML GPDSDIGSPD SSLLSGTALH ENNWRELLGI KTGDLRQVII ACGKAVDENA  180
WYMDALMSEL RQMVSVSGEP MQRLGAYMLE GLIARLSFTG HALYKSLKCK EPVATSSELM  240
SYMHLLYDIC PFFKFGYMSA NGAIAEAVKG ENFIHIIDFQ IAQGSQWMTM IQALASRPGR  300
RLFLRITGID DSNSAHARGG GLDIVGQRLH SIAQSCGLPF EFNPVPAASH EVMYEHLCIR  360
PGEAIVVNFA YQLHHTPDES VGIENHRDRI LRMVKSLSPR VVTLVEQEAN TNMAPFFLRY  420
LETLDYYTAM FEAIDVARPR DDKKRISAEQ HCVARDIVNL VACEGAERIE RHEPFGKWRA  480
RLAMAGFRPY PLSPVVNSTI KTLLDSYHSY YRLEEKDGVL YLGWKNRKLV VSSAWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-621675356374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.57210.0callus| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG821300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672840.0BT067284.1 Zea mays full-length cDNA clone ZM_BFb0379I09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985375.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A2T7CGG80.0A0A2T7CGG8_9POAL; Uncharacterized protein
STRINGPavir.Ia04887.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]