PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG818700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 299aa    MW: 31610.4 Da    PI: 6.0347
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG818700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20118167255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+g
  Pavir.9NG818700.1.p 118 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRG 167
                          59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-32117177No hitNo description
PROSITE profilePS5103223.604118175IPR001471AP2/ERF domain
SMARTSM003801.8E-38118181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-33118176IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23118176IPR016177DNA-binding domain
PfamPF008471.4E-14119167IPR001471AP2/ERF domain
PRINTSPR003672.6E-11119130IPR001471AP2/ERF domain
PRINTSPR003672.6E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MATTIDWHGR SGALPAALYE MADSKELVRA LAAPPVQQQP PTISFAYPCS GGVEQQSAAS  60
SLLGAAGGLT PAQVLQVQSQ LQFLRRPAAA GGALAAVATQ PMKRQAPAPL PERPVSKLYR  120
GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEEAALAYDS AAFRLRGDSA RLNFPELRRG  180
GAHLGPPLHA AVDAKLHAIC NGTDVASQSQ SQSNASAATA ATTPSTFSSA SPDIKSEPGC  240
SGSESLSSAD GDVSSTSSSD VVPEMQLLDF SEAPWDESES FLLRKYPSLE IDWESILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20117175463ATERF1
3gcc_A1e-20117175463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.233420.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG818700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795666.10.0ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A2S3ITE40.0A0A2S3ITE4_9POAL; Uncharacterized protein
STRINGSi036827m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-41related to AP2 4